Variant report

Variant	rs62010031
Chromosome Location	chr15:54535409-54535410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10518761	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629837	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11630328	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11630329	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11635342	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635750	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11636703	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11637720	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11638873	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12101497	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953182	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16974384	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974387	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974390	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974409	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974431	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16974443	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16974464	0.88[ASN][1000 genomes]
rs2414293	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28523822	0.88[ASN][1000 genomes]
rs4502150	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4776217	0.87[EUR][1000 genomes]
rs4776221	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4776223	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62010056	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011962	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62012000	0.88[ASN][1000 genomes]
rs6493671	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8028896	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8039159	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806492	0.84[EUR][1000 genomes]
rs9944267	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

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