Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10518761	0.84[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs11629837	0.85[YRI][hapmap]
rs11635342	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11636703	0.84[CEU][hapmap];0.90[YRI][hapmap]
rs11637720	0.81[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs11638873	1.00[YRI][hapmap]
rs12101497	1.00[YRI][hapmap]
rs16974384	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs16974387	0.85[AFR][1000 genomes]
rs16974390	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16974409	0.83[YRI][hapmap]
rs16974431	0.90[YRI][hapmap]
rs16974442	0.95[YRI][hapmap]
rs16974443	0.90[YRI][hapmap]
rs16974451	0.90[YRI][hapmap]
rs16974456	0.90[YRI][hapmap]
rs16974459	0.95[YRI][hapmap]
rs16974464	0.84[CEU][hapmap];0.90[YRI][hapmap]
rs4502150	0.83[MKK][hapmap];0.90[YRI][hapmap]
rs4776217	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4776221	0.82[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs4776223	1.00[YRI][hapmap]
rs62010031	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6493671	1.00[YRI][hapmap]
rs8028896	1.00[YRI][hapmap]
rs8036134	0.86[YRI][hapmap]
rs9806492	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9944267	USP8	cis	parietal	SCAN
rs9944267	ONECUT1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

Quick Search: