Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11629837	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs11630329	0.81[AFR][1000 genomes]
rs11636703	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11637720	0.88[LWK][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs11638873	0.89[YRI][hapmap]
rs12101497	0.90[YRI][hapmap]
rs16974384	0.95[YRI][hapmap]
rs16974390	0.90[YRI][hapmap]
rs16974431	1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16974439	0.83[AMR][1000 genomes]
rs16974442	0.83[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs16974443	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16974445	0.83[AMR][1000 genomes]
rs16974451	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974459	0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16974464	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2414293	0.96[AFR][1000 genomes]
rs28523822	0.93[AFR][1000 genomes]
rs28533644	0.83[AMR][1000 genomes]
rs28747685	0.83[AMR][1000 genomes]
rs4502150	1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4776221	0.88[LWK][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs4776223	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs57282723	0.83[AMR][1000 genomes]
rs62012000	0.96[AFR][1000 genomes]
rs6493671	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs74015126	0.83[AMR][1000 genomes]
rs8028896	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs8034016	0.83[AMR][1000 genomes]
rs8036134	0.83[AMR][1000 genomes]
rs9944267	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16974456	ACP6	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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