Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11630329	0.85[AFR][1000 genomes]
rs11635750	0.83[AFR][1000 genomes]
rs11636703	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs11637720	0.84[LWK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs11638873	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs12101497	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs16974384	0.90[YRI][hapmap]
rs16974390	0.95[YRI][hapmap]
rs16974431	0.97[LWK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs16974443	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs16974451	0.83[ASW][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs16974456	0.83[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs16974459	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16974464	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs2414293	0.91[AFR][1000 genomes]
rs28523822	0.89[AFR][1000 genomes]
rs4502150	0.97[LWK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs4776221	0.84[LWK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs4776223	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs57282723	0.82[AFR][1000 genomes]
rs62012000	0.91[AFR][1000 genomes]
rs6493671	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs8028896	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs8036134	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs9944267	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3355604	chr15:54579902-54580916	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54580200-54580800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr15:54580200-54581200	Enhancers	Primary neutrophils fromperipheralblood	blood

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