Variant report

Variant	rs8036134
Chromosome Location	chr15:54549659-54549660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11629837	0.81[AFR][1000 genomes]
rs11630328	0.97[AFR][1000 genomes]
rs11630329	0.87[AFR][1000 genomes]
rs11635750	0.85[AFR][1000 genomes]
rs11637720	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs11638873	0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs12101497	0.86[YRI][hapmap];0.90[AFR][1000 genomes]
rs16974384	0.81[YRI][hapmap]
rs16974390	0.86[YRI][hapmap]
rs16974409	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16974442	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs16974451	0.83[AMR][1000 genomes]
rs16974456	0.83[AMR][1000 genomes]
rs16974459	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs28533644	0.81[AFR][1000 genomes]
rs28587544	0.81[AFR][1000 genomes]
rs4776221	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs4776223	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs57282723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62011962	0.92[AFR][1000 genomes]
rs6493671	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs8028896	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs9944267	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54542600-54549800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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