Variant report

Variant	rs10518823
Chromosome Location	chr15:56147112-56147113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56146576..56148212-chr15:56149809..56151716,2	K562	blood:
2	chr15:56146351..56148212-chr15:56150216..56152289,2	K562	blood:
3	chr15:56138547..56140362-chr15:56145607..56147733,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12898478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12899701	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12901802	0.91[EUR][1000 genomes]
rs12902173	0.91[EUR][1000 genomes]
rs12904236	0.91[EUR][1000 genomes]
rs12906245	0.84[EUR][1000 genomes]
rs12906350	0.84[EUR][1000 genomes]
rs12908286	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12908466	0.85[EUR][1000 genomes]
rs12911101	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12911380	0.83[AMR][1000 genomes]
rs12913220	0.84[EUR][1000 genomes]
rs17819270	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1912397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1912403	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2899593	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs34162982	0.91[EUR][1000 genomes]
rs34223710	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34333169	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34652186	0.91[EUR][1000 genomes]
rs34718758	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34727807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34995202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35086304	0.91[EUR][1000 genomes]
rs35142499	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35313340	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35759462	0.84[EUR][1000 genomes]
rs4296197	0.91[EUR][1000 genomes]
rs66857236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67046147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67825863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71476753	0.91[EUR][1000 genomes]
rs71476755	0.91[EUR][1000 genomes]
rs71476760	0.91[EUR][1000 genomes]
rs7172454	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8033157	0.81[EUR][1000 genomes]
rs8038204	0.91[EUR][1000 genomes]
rs8039617	0.91[EUR][1000 genomes]
rs8042074	0.91[EUR][1000 genomes]
rs8042216	0.91[EUR][1000 genomes]
rs8043427	0.91[EUR][1000 genomes]
rs906811	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv976866	chr15:56145370-56147851	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56115400-56148000	Weak transcription	Ovary	ovary
2	chr15:56116600-56150600	Weak transcription	Right Ventricle	heart
3	chr15:56116800-56162200	Weak transcription	Fetal Heart	heart
4	chr15:56118600-56151000	Weak transcription	Fetal Kidney	kidney
5	chr15:56118800-56149200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:56118800-56151400	Weak transcription	Brain Anterior Caudate	brain
7	chr15:56120000-56147800	Weak transcription	HepG2	liver
8	chr15:56120800-56147200	Weak transcription	Thymus	Thymus
9	chr15:56121200-56147200	Weak transcription	Spleen	Spleen
10	chr15:56122600-56152000	Weak transcription	Fetal Thymus	thymus
11	chr15:56122600-56153800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:56122600-56154800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:56122600-56156600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:56122800-56147200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:56122800-56147600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:56122800-56156000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:56127200-56155400	Strong transcription	Osteobl	bone
18	chr15:56127200-56155800	Strong transcription	HSMM	muscle
19	chr15:56129000-56157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:56129600-56147400	Weak transcription	Esophagus	oesophagus
21	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
22	chr15:56133000-56152600	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:56133600-56154400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:56134200-56150600	Weak transcription	Left Ventricle	heart
25	chr15:56134400-56147400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:56134400-56150000	Weak transcription	Psoas Muscle	Psoas
27	chr15:56134400-56156600	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:56134800-56151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:56135000-56156600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:56135200-56152600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr15:56135400-56147800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:56138200-56161800	Weak transcription	K562	blood
33	chr15:56138400-56149000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:56138600-56154400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:56138800-56152800	Weak transcription	GM12878-XiMat	blood
36	chr15:56139400-56155400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:56139600-56153200	Strong transcription	NHEK	skin
38	chr15:56140000-56147800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:56140000-56148800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:56140000-56149200	Strong transcription	NH-A	brain
41	chr15:56140000-56152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:56140200-56149000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:56140200-56155600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:56140600-56147200	Weak transcription	Lung	lung
45	chr15:56140600-56147400	Weak transcription	Fetal Lung	lung
46	chr15:56140600-56147600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:56140600-56148800	Strong transcription	A549	lung
48	chr15:56141200-56147800	Weak transcription	Adipose Nuclei	Adipose
49	chr15:56141800-56150800	Weak transcription	Dnd41	blood
50	chr15:56142800-56153200	Strong transcription	Stomach Smooth Muscle	stomach

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