Variant report

Variant	rs66857236
Chromosome Location	chr15:56163163-56163164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10518823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12898478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12899701	0.85[EUR][1000 genomes]
rs12901802	0.91[EUR][1000 genomes]
rs12902173	0.91[EUR][1000 genomes]
rs12904236	0.91[EUR][1000 genomes]
rs12906245	0.84[EUR][1000 genomes]
rs12906350	0.84[EUR][1000 genomes]
rs12908286	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12908466	0.85[EUR][1000 genomes]
rs12911101	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12911380	0.83[AMR][1000 genomes]
rs12913220	0.84[EUR][1000 genomes]
rs17819270	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1912397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1912403	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2899593	0.85[EUR][1000 genomes]
rs34162982	0.91[EUR][1000 genomes]
rs34223710	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34333169	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34652186	0.91[EUR][1000 genomes]
rs34718758	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34727807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34995202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35086304	0.91[EUR][1000 genomes]
rs35142499	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35313340	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35759462	0.84[EUR][1000 genomes]
rs4296197	0.91[EUR][1000 genomes]
rs67046147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67825863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71476753	0.91[EUR][1000 genomes]
rs71476755	0.91[EUR][1000 genomes]
rs71476760	0.91[EUR][1000 genomes]
rs7172454	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8033157	0.81[EUR][1000 genomes]
rs8038204	0.91[EUR][1000 genomes]
rs8039617	0.91[EUR][1000 genomes]
rs8042074	0.91[EUR][1000 genomes]
rs8042216	0.91[EUR][1000 genomes]
rs8043427	0.91[EUR][1000 genomes]
rs906811	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
2	chr15:56148200-56174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:56149000-56163600	Weak transcription	Gastric	stomach
4	chr15:56149000-56164800	Weak transcription	Aorta	Aorta
5	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
6	chr15:56152400-56164800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:56152800-56165000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56152800-56174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:56153000-56163200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:56153000-56163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:56153000-56164800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:56153000-56164800	Weak transcription	Ovary	ovary
13	chr15:56153000-56167400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:56153000-56174000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:56153000-56174400	Weak transcription	HSMMtube	muscle
16	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
18	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:56153800-56165600	Weak transcription	HMEC	breast
20	chr15:56154400-56164800	Weak transcription	Psoas Muscle	Psoas
21	chr15:56154400-56164800	Weak transcription	NH-A	brain
22	chr15:56155400-56165200	Weak transcription	Fetal Intestine Large	intestine
23	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:56156200-56165600	Strong transcription	HSMM	muscle
26	chr15:56158200-56164800	Weak transcription	Osteobl	bone
27	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
28	chr15:56160600-56164800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:56160800-56164800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:56161200-56163400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr15:56161200-56163600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:56161200-56174400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:56161400-56164200	Weak transcription	Hela-S3	cervix
35	chr15:56161400-56164200	Weak transcription	HUVEC	blood vessel
36	chr15:56161400-56164600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:56161400-56164800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:56161400-56164800	Weak transcription	Liver	Liver
39	chr15:56161400-56174400	Weak transcription	NHEK	skin
40	chr15:56161400-56174600	Weak transcription	Primary T cells from cord blood	blood
41	chr15:56161400-56177400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr15:56161600-56164600	Enhancers	A549	lung
43	chr15:56161600-56164800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:56161800-56164200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:56161800-56164600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:56161800-56174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:56162000-56163400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr15:56162000-56163600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:56162600-56163600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:56162800-56163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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