Variant report

Variant	rs10518964
Chromosome Location	chr15:58407414-58407415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58402749..58406127-chr15:58406949..58409453,4	K562	blood:
2	chr15:58402721..58405438-chr15:58406173..58409890,4	K562	blood:
3	chr15:58400286..58402292-chr15:58406604..58408626,2	K562	blood:
4	chr15:58356055..58357878-chr15:58406114..58408296,2	K562	blood:
5	chr15:58358402..58360542-chr15:58406579..58409075,2	K562	blood:

Variant related genes	Relation type
ENSG00000259285	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10220764	0.82[EUR][1000 genomes]
rs12050800	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12437895	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12440410	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12440784	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12440934	1.00[CEU][hapmap]
rs1554203	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16939816	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17571313	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1874156	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2642624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2704203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28631754	0.81[ASN][1000 genomes]
rs34034101	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34246303	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3959686	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4511467	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4774289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57139208	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60179196	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60401526	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60802802	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7180019	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73424166	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73426124	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58405400-58408400	Enhancers	K562	blood
2	chr15:58406600-58410400	Enhancers	Liver	Liver
3	chr15:58407000-58408000	Weak transcription	HepG2	liver
4	chr15:58407400-58408400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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