Variant report

Variant	rs12437895
Chromosome Location	chr15:58431115-58431116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:58431043-58431149	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr15:58430794-58431194	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10518964	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12050800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440410	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12440784	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12440934	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1554203	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16939816	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17571313	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1874156	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2642624	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2704203	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34034101	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34246303	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3959686	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4511467	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774289	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57139208	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60179196	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60401526	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60802802	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7180019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73424166	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73426124	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58427400-58431200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:58428800-58431600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:58428800-58433600	Weak transcription	K562	blood
4	chr15:58429600-58432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr15:58429600-58436800	Active TSS	Primary hematopoietic stem cells	blood
6	chr15:58429800-58431600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:58430000-58436000	Active TSS	Primary B cells from cord blood	blood
8	chr15:58430400-58431600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:58430400-58432400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr15:58430400-58433200	Active TSS	Liver	Liver
11	chr15:58430600-58431200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:58430600-58431600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:58430600-58431600	Enhancers	NHDF-Ad	bronchial
14	chr15:58430600-58432000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:58430600-58432000	Enhancers	Adipose Nuclei	Adipose
16	chr15:58430600-58432600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:58430600-58432800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:58430600-58432800	Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr15:58430800-58431200	Weak transcription	Fetal Lung	lung
20	chr15:58430800-58431600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:58430800-58431600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:58430800-58431800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr15:58430800-58431800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:58430800-58431800	Active TSS	Primary T cells from cord blood	blood
25	chr15:58431000-58431800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:58431000-58431800	Weak transcription	HMEC	breast

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