Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58414406..58417362-chr15:58440343..58442016,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10220764	0.82[EUR][1000 genomes]
rs10518964	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12050800	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12437895	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12440410	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12440784	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1554203	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16939816	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17571313	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1874156	0.96[EUR][1000 genomes]
rs2704203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34034101	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34246303	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3959686	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4511467	0.96[EUR][1000 genomes]
rs4774289	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57139208	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60179196	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60401526	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60802802	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7180019	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73424166	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426124	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58414800-58415200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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