Variant report

Variant	rs10519086
Chromosome Location	chr2:67262646-67262647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12619502	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6741648	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs72823909	0.81[EUR][1000 genomes]
rs72823971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs752937	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs752938	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs752939	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7602130	0.86[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67261400-67264600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:67261400-67264600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:67261600-67264600	Weak transcription	Stomach Mucosa	stomach
4	chr2:67261800-67264600	Weak transcription	Small Intestine	intestine
5	chr2:67261800-67264800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:67262200-67263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:67262600-67265600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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