Variant report

Variant	rs752938
Chromosome Location	chr2:67311224-67311225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67309863..67311895-chr2:67315048..67316901,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10165553	0.96[ASN][1000 genomes]
rs10185431	0.90[ASN][1000 genomes]
rs11890661	0.96[ASN][1000 genomes]
rs12619502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17032961	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033002	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17033026	0.96[ASN][1000 genomes]
rs3821130	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142761	0.83[ASN][1000 genomes]
rs55703053	0.96[ASN][1000 genomes]
rs57138372	0.96[ASN][1000 genomes]
rs57923665	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728124	0.96[ASN][1000 genomes]
rs6741648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823976	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72823977	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72823980	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72823981	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72823987	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72824002	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937643	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs752937	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs752939	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588922	0.96[ASN][1000 genomes]
rs7602130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs990255	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv34381	chr2:67273120-67316250	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67308600-67313600	Enhancers	Colon Smooth Muscle	Colon
2	chr2:67309000-67313400	Enhancers	Fetal Lung	lung
3	chr2:67309800-67311600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:67310000-67313000	Enhancers	Fetal Kidney	kidney
5	chr2:67310000-67315600	Enhancers	Fetal Stomach	stomach
6	chr2:67310200-67313000	Enhancers	Rectal Smooth Muscle	rectum
7	chr2:67311000-67311400	Active TSS	Stomach Smooth Muscle	stomach
8	chr2:67311000-67312800	Enhancers	Fetal Muscle Leg	muscle
9	chr2:67311200-67311400	Enhancers	Duodenum Smooth Muscle	Duodenum

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