Variant report

Variant	rs12619502
Chromosome Location	chr2:67266506-67266507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519086	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4142761	0.87[ASN][1000 genomes]
rs6741648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72823971	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72823976	0.85[ASN][1000 genomes]
rs72823977	0.87[ASN][1000 genomes]
rs72823980	0.82[ASN][1000 genomes]
rs752937	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs752938	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs752939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7602130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs990255	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67264000-67266600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:67264200-67267400	Enhancers	Fetal Intestine Small	intestine
3	chr2:67264600-67267400	Enhancers	Fetal Intestine Large	intestine
4	chr2:67264800-67268200	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:67265200-67267200	Enhancers	Pancreas	Pancrea
6	chr2:67265400-67266800	Weak transcription	Fetal Kidney	kidney
7	chr2:67265400-67268200	Enhancers	Liver	Liver
8	chr2:67265600-67266600	Weak transcription	Gastric	stomach
9	chr2:67265600-67266800	Weak transcription	Fetal Lung	lung
10	chr2:67266200-67266600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:67266200-67266600	Weak transcription	Stomach Mucosa	stomach
12	chr2:67266200-67267000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:67266400-67268400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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