Variant report

Variant	rs4142761
Chromosome Location	chr2:67269976-67269977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12619502	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17032961	0.87[ASN][1000 genomes]
rs17033002	0.83[ASN][1000 genomes]
rs3821130	0.83[ASN][1000 genomes]
rs57923665	0.83[ASN][1000 genomes]
rs6741648	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72823976	0.93[ASN][1000 genomes]
rs72823977	0.95[ASN][1000 genomes]
rs72823980	0.91[ASN][1000 genomes]
rs72823981	0.87[ASN][1000 genomes]
rs72823987	0.87[ASN][1000 genomes]
rs72824002	0.83[ASN][1000 genomes]
rs73937643	0.83[ASN][1000 genomes]
rs752937	1.00[JPT][hapmap]
rs752938	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs752939	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7602130	1.00[JPT][hapmap]
rs990255	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67267800-67270600	Weak transcription	Pancreas	Pancrea
2	chr2:67268400-67273200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:67268800-67270000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:67269200-67274200	Weak transcription	Fetal Lung	lung
5	chr2:67269400-67273200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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