Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67268005..67270725-chr2:67271591..67273930,3	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10165553	0.81[ASN][1000 genomes]
rs11890661	0.81[ASN][1000 genomes]
rs12619502	0.85[ASN][1000 genomes]
rs17032961	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17033002	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17033026	0.81[ASN][1000 genomes]
rs3821130	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4142761	0.93[ASN][1000 genomes]
rs55703053	0.81[ASN][1000 genomes]
rs57138372	0.81[ASN][1000 genomes]
rs57923665	0.85[ASN][1000 genomes]
rs6728124	0.81[ASN][1000 genomes]
rs6741648	0.85[ASN][1000 genomes]
rs72823977	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72823980	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72823981	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72823987	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72824002	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73937643	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs752937	0.81[ASN][1000 genomes]
rs752938	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs752939	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7588922	0.81[ASN][1000 genomes]
rs7602130	0.81[ASN][1000 genomes]
rs990255	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67268400-67273200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:67269200-67274200	Weak transcription	Fetal Lung	lung
3	chr2:67269400-67273200	Weak transcription	Hela-S3	cervix
4	chr2:67272400-67274800	Weak transcription	Pancreas	Pancrea

Quick Search: