Variant report

Variant	rs10519859
Chromosome Location	chr4:147959412-147959413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10021632	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13116549	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1370301	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437261	0.92[EUR][1000 genomes]
rs1437270	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1561223	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28612623	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4835363	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6537436	0.81[EUR][1000 genomes]
rs6537438	0.92[EUR][1000 genomes]
rs6537448	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs722966	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147955800-147961200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:147958600-147959600	Enhancers	Stomach Smooth Muscle	stomach
3	chr4:147959000-147959600	Enhancers	Brain Hippocampus Middle	brain
4	chr4:147959400-147962600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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