Variant report

Variant	rs1437261
Chromosome Location	chr4:147896553-147896554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10021632	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10519859	0.92[EUR][1000 genomes]
rs1370301	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1437270	0.81[EUR][1000 genomes]
rs1561223	0.81[EUR][1000 genomes]
rs4835363	0.84[EUR][1000 genomes]
rs6537436	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6537438	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537448	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722966	0.81[EUR][1000 genomes]
rs7656258	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7677252	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147895000-147898400	Enhancers	Primary hematopoietic stem cells	blood
2	chr4:147895600-147897000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:147895600-147898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:147895600-147898200	Enhancers	Fetal Thymus	thymus
5	chr4:147895600-147898200	Enhancers	Thymus	Thymus
6	chr4:147895600-147899000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:147896400-147896800	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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