Variant report

Variant	rs6537448
Chromosome Location	chr4:147969104-147969105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10021632	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10519859	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13116549	0.90[ASN][1000 genomes]
rs1370301	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437261	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1437270	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1561223	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28612623	0.90[ASN][1000 genomes]
rs4835363	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6537436	0.82[EUR][1000 genomes]
rs6537438	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722966	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7677252	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147965800-147970400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:147967800-147971800	Weak transcription	Fetal Kidney	kidney
3	chr4:147968400-147971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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