Variant report

Variant	rs10519951
Chromosome Location	chr4:149201619-149201620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11936376	0.84[CHB][hapmap];0.92[GIH][hapmap]
rs17484063	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17484118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17484259	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17581220	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17581262	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17581570	0.84[CHB][hapmap]
rs2356210	0.92[GIH][hapmap]
rs2883929	0.84[CHB][hapmap]
rs60760185	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68001401	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6826471	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6852213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728439	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728448	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728454	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728461	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689925	0.84[CHB][hapmap];0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv527076	chr4:149196991-149201619	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10519951	C13orf18	trans	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149192400-149209400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:149195000-149204200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:149195200-149203600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:149195200-149207600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:149195600-149203200	Weak transcription	Right Ventricle	heart
7	chr4:149195600-149203600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:149195600-149204000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:149195800-149203600	Weak transcription	Liver	Liver
10	chr4:149195800-149205000	Weak transcription	Gastric	stomach
11	chr4:149196200-149203800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:149196800-149202800	Weak transcription	Fetal Heart	heart
13	chr4:149196800-149209600	Weak transcription	Pancreas	Pancrea
14	chr4:149197400-149203800	Weak transcription	Stomach Mucosa	stomach
15	chr4:149198000-149203200	Weak transcription	Fetal Intestine Large	intestine
16	chr4:149199200-149203200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:149199600-149209600	Weak transcription	Left Ventricle	heart
18	chr4:149199800-149203600	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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