Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149172838..149174684-chr4:149174942..149176809,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519951	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17484063	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17484118	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17484259	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17581220	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17581262	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68001401	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6826471	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6852213	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728448	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728454	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728461	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728463	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149174400-149176800	Enhancers	Liver	Liver
6	chr4:149174400-149176800	Enhancers	Stomach Mucosa	stomach
7	chr4:149175200-149177200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:149175400-149177400	Enhancers	HUVEC	blood vessel
10	chr4:149175600-149177200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart
15	chr4:149176400-149176800	Enhancers	Colon Smooth Muscle	Colon
16	chr4:149176400-149179200	Weak transcription	Left Ventricle	heart
17	chr4:149176400-149182400	Weak transcription	Pancreas	Pancrea
18	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
19	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
20	chr4:149176600-149177000	Enhancers	Fetal Kidney	kidney

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