Variant report

Variant	rs72728454
Chromosome Location	chr4:149184295-149184296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519951	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17484063	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17484118	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17484259	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17581220	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17581262	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60760185	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68001401	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6826471	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6852213	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728439	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728448	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728461	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72728463	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
3	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
4	chr4:149177200-149184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
6	chr4:149177400-149184600	Weak transcription	HUVEC	blood vessel
7	chr4:149177400-149184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:149180000-149194600	Weak transcription	Left Ventricle	heart
9	chr4:149181200-149194800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:149182600-149187600	Weak transcription	Gastric	stomach
11	chr4:149182600-149194800	Weak transcription	Esophagus	oesophagus
12	chr4:149183000-149189800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:149183000-149194800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:149184000-149185800	Enhancers	Pancreas	Pancrea
15	chr4:149184000-149186200	Weak transcription	Fetal Kidney	kidney
16	chr4:149184200-149187400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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