Variant report

Variant	rs10521168
Chromosome Location	chr16:48245754-48245755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13334798	1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs17744321	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17822471	0.84[AMR][1000 genomes]
rs17822697	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41282047	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7194667	1.00[MEX][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48239400-48245800	Weak transcription	Right Atrium	heart
2	chr16:48239600-48250000	Weak transcription	Pancreas	Pancrea
3	chr16:48241000-48245800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:48243800-48246400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr16:48244000-48245800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:48244400-48245800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:48244400-48246000	Enhancers	HMEC	breast
8	chr16:48245600-48246600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links