Variant report

Variant	rs17822697
Chromosome Location	chr16:48249734-48249735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10521168	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11076559	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11076560	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13334798	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17744321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17750580	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17822471	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes]
rs17825174	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs34505973	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41282047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999468	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57879591	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7194667	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17822697	SIAH1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48239600-48250000	Weak transcription	Pancreas	Pancrea
2	chr16:48249600-48249800	Flanking Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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