Variant report

Variant	rs57879591
Chromosome Location	chr16:48342758-48342759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48341376..48343288-chr16:48345448..48347987,2	K562	blood:
2	chr16:48334177..48335883-chr16:48341633..48344625,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11076559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11076560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11554208	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13334798	0.93[EUR][1000 genomes]
rs17744321	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17750580	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17822471	0.82[AMR][1000 genomes]
rs17822697	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17825174	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34505973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41282047	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56999468	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57251394	1.00[AFR][1000 genomes]
rs59748923	0.89[AMR][1000 genomes]
rs7194667	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2758424	chr16:48329437-48479754	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv2758645	chr16:48329437-48479754	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48321400-48343200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:48321800-48344800	Weak transcription	Fetal Brain Male	brain
3	chr16:48325000-48350800	Weak transcription	NHLF	lung
4	chr16:48327400-48344000	Strong transcription	HepG2	liver
5	chr16:48329800-48343000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:48329800-48344400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr16:48330200-48343600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr16:48330200-48347800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:48330400-48344200	Strong transcription	Placenta	Placenta
10	chr16:48330400-48344800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr16:48330400-48354600	Weak transcription	Stomach Mucosa	stomach
12	chr16:48333000-48343200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr16:48333200-48344800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr16:48333600-48345600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:48334600-48350800	Weak transcription	NH-A	brain
16	chr16:48334800-48361400	Strong transcription	Liver	Liver
17	chr16:48335800-48344000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr16:48337400-48343400	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr16:48337400-48343600	Weak transcription	Hela-S3	cervix
20	chr16:48337400-48344800	Weak transcription	K562	blood
21	chr16:48337800-48343600	Weak transcription	Right Ventricle	heart
22	chr16:48338000-48343400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr16:48338000-48344600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr16:48338000-48344800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr16:48338000-48351000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:48338200-48344600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:48338200-48344800	Weak transcription	HUVEC	blood vessel
28	chr16:48338400-48350800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr16:48338600-48352600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr16:48338600-48352600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr16:48338600-48381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr16:48339000-48343600	Weak transcription	Psoas Muscle	Psoas
33	chr16:48339000-48345600	Weak transcription	Aorta	Aorta
34	chr16:48339000-48347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr16:48339200-48343600	Weak transcription	Small Intestine	intestine
36	chr16:48339200-48344400	Weak transcription	Ovary	ovary
37	chr16:48339200-48345600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr16:48339400-48344200	Weak transcription	Lung	lung
39	chr16:48339400-48344200	Weak transcription	Thymus	Thymus
40	chr16:48339400-48346600	Weak transcription	Gastric	stomach
41	chr16:48339400-48368000	Weak transcription	Colonic Mucosa	Colon
42	chr16:48339600-48343400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr16:48339800-48344000	Weak transcription	Fetal Thymus	thymus
44	chr16:48340200-48346400	Weak transcription	NHEK	skin
45	chr16:48340400-48343000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr16:48340400-48345200	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr16:48340600-48344600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr16:48340800-48344000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr16:48341000-48344400	Weak transcription	Brain Angular Gyrus	brain
50	chr16:48341200-48347400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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