Variant report

Variant	rs7194667
Chromosome Location	chr16:48242898-48242899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10521168	1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs11076559	0.93[EUR][1000 genomes]
rs11076560	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs13334798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17744321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17750580	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17821664	1.00[GIH][hapmap]
rs17822471	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs17822697	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17825174	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs34505973	0.93[EUR][1000 genomes]
rs41282047	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999468	0.93[EUR][1000 genomes]
rs57879591	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48239400-48245800	Weak transcription	Right Atrium	heart
2	chr16:48239600-48250000	Weak transcription	Pancreas	Pancrea
3	chr16:48241000-48245800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:48241200-48243400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr16:48241200-48244000	Weak transcription	Liver	Liver
6	chr16:48241200-48244400	Weak transcription	HMEC	breast
7	chr16:48241400-48243800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:48241600-48244400	Weak transcription	HepG2	liver
9	chr16:48241800-48244400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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