Variant report

Variant	rs10732333
Chromosome Location	chr9:13282909-13282910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr9:13282842-13283488	SK-N-SH	brain:	n/a	n/a
2	JUND	chr9:13282819-13283452	SK-N-SH	brain:	n/a	chr9:13283105-13283115 chr9:13283105-13283115
3	TCF12	chr9:13282830-13283468	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr9:13282813-13283583	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr9:13282787-13283662	SK-N-SH	brain:	n/a	n/a
6	TEAD4	chr9:13282847-13283548	SK-N-SH	brain:	n/a	n/a
7	TCF12	chr9:13282807-13283611	SK-N-SH	brain:	n/a	n/a
8	TEAD4	chr9:13282796-13283505	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:13033734..13035793-chr9:13280439..13283221,2	K562	blood:
2	chr9:13278596..13280107-chr9:13281623..13284453,2	MCF-7	breast:
3	chr9:13281407..13283656-chr9:13286644..13288961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234740	TF binding region
MPDZ	TF binding region
ENSG00000234740	Chromatin interaction
ENSG00000107186	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10733257	0.85[AMR][1000 genomes]
rs1330132	1.00[AMR][1000 genomes]
rs1330138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1331678	0.85[AMR][1000 genomes]
rs1411349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1542794	1.00[AMR][1000 genomes]
rs1817891	1.00[AMR][1000 genomes]
rs1854664	1.00[AMR][1000 genomes]
rs1928646	1.00[AMR][1000 genomes]
rs1928647	1.00[AMR][1000 genomes]
rs2131891	0.85[AMR][1000 genomes]
rs7857149	1.00[AMR][1000 genomes]
rs7860349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13279800-13284200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13280200-13283000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:13280200-13283200	Weak transcription	Fetal Lung	lung
4	chr9:13280200-13283400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:13280200-13283600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:13280200-13284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:13280200-13284000	Enhancers	Colon Smooth Muscle	Colon
8	chr9:13280200-13284000	Weak transcription	Fetal Kidney	kidney
9	chr9:13280200-13284000	Weak transcription	NHLF	lung
10	chr9:13280200-13284400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:13280200-13285200	Weak transcription	Ovary	ovary
12	chr9:13280200-13295600	Weak transcription	Aorta	Aorta
13	chr9:13281000-13283800	Enhancers	Osteobl	bone
14	chr9:13281200-13283800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:13281200-13285400	Enhancers	Fetal Heart	heart
16	chr9:13281800-13284600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:13282200-13283800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:13282400-13283600	Enhancers	NH-A	brain
19	chr9:13282400-13284000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:13282400-13284600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:13282600-13283000	Weak transcription	Fetal Stomach	stomach
22	chr9:13282600-13283400	Enhancers	NHDF-Ad	bronchial
23	chr9:13282600-13283800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:13282600-13283800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:13282600-13284200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:13282800-13283400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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