Variant report

Variant	rs7860349
Chromosome Location	chr9:13276146-13276147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13275549..13278427-chr9:13279998..13281670,2	K562	blood:
2	chr9:13266586..13268806-chr9:13275605..13278055,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10732333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10733257	0.85[AMR][1000 genomes]
rs1330132	1.00[AMR][1000 genomes]
rs1330138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1331678	0.85[AMR][1000 genomes]
rs1411349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1542794	1.00[AMR][1000 genomes]
rs1817891	1.00[AMR][1000 genomes]
rs1854664	1.00[AMR][1000 genomes]
rs1928646	1.00[AMR][1000 genomes]
rs1928647	1.00[AMR][1000 genomes]
rs2131891	0.85[AMR][1000 genomes]
rs7857149	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13226800-13278000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:13240000-13278000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:13255000-13277200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:13256800-13277600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:13265600-13278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:13268800-13278000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:13268800-13278000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:13269000-13276600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:13269800-13277800	Weak transcription	Aorta	Aorta
10	chr9:13270000-13277800	Weak transcription	Fetal Brain Male	brain
11	chr9:13270000-13278200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:13272600-13278000	Weak transcription	Right Ventricle	heart
13	chr9:13273200-13278200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:13274800-13276200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:13274800-13278000	Enhancers	Fetal Heart	heart
16	chr9:13275000-13276200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:13275000-13276200	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:13275200-13278000	Weak transcription	NHDF-Ad	bronchial
19	chr9:13275400-13276600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:13275400-13276600	Weak transcription	HepG2	liver
21	chr9:13275400-13276800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:13275400-13276800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:13275400-13277400	Weak transcription	Fetal Lung	lung
24	chr9:13275400-13277600	Weak transcription	Fetal Stomach	stomach
25	chr9:13275400-13277600	Weak transcription	Ovary	ovary
26	chr9:13275400-13277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:13275400-13277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:13275400-13277800	Weak transcription	NHLF	lung
29	chr9:13275400-13278000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:13275400-13278000	Weak transcription	Brain Germinal Matrix	brain
31	chr9:13275400-13278000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:13275400-13278200	Weak transcription	Liver	Liver
33	chr9:13275600-13276800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:13275600-13277000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:13275600-13277000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:13275600-13277000	Weak transcription	Adipose Nuclei	Adipose
37	chr9:13275600-13277000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:13275600-13277200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:13275600-13277600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:13275600-13277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:13275600-13277800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:13275600-13277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:13275600-13277800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr9:13275600-13277800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:13275600-13277800	Weak transcription	Osteobl	bone
46	chr9:13275600-13278000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:13275600-13278000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:13275600-13278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:13275600-13278000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr9:13275600-13278000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links