Variant report

Variant	rs10732779
Chromosome Location	chr10:99271492-99271493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99256475..99261666-chr10:99270366..99276913,12	MCF-7	breast:
2	chr10:99271315..99274212-chr10:99282293..99285243,2	K562	blood:
3	chr10:99262328..99265994-chr10:99268306..99271864,5	MCF-7	breast:
4	chr10:99270070..99271608-chr10:99274562..99276590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10732780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736118	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4919103	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584131	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6584132	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7089713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946984	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946985	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs946986	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv3450224	chr10:99271432-99272026	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:99260800-99276800	Weak transcription	HSMM	muscle
4	chr10:99262000-99271600	Weak transcription	HepG2	liver
5	chr10:99263400-99271600	Weak transcription	Lung	lung
6	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
8	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
9	chr10:99264000-99271600	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:99264000-99271600	Weak transcription	Right Ventricle	heart
11	chr10:99266200-99271800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:99266200-99272200	Weak transcription	Psoas Muscle	Psoas
13	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:99268200-99272400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:99268400-99271600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:99268600-99272000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:99268600-99272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:99268600-99272000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:99268600-99272800	Weak transcription	NHEK	skin
23	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
24	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:99268600-99276600	Weak transcription	HMEC	breast
27	chr10:99268600-99277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:99268600-99277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:99268600-99277800	Weak transcription	NHLF	lung
30	chr10:99268800-99272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:99268800-99274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:99268800-99274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:99268800-99274800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:99268800-99276600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:99268800-99276600	Weak transcription	HUVEC	blood vessel
36	chr10:99268800-99277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:99268800-99277400	Weak transcription	NH-A	brain
38	chr10:99268800-99277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:99269000-99271800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:99269000-99272800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:99269000-99274600	Weak transcription	Brain Substantia Nigra	brain
42	chr10:99269000-99277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:99269000-99277600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:99269200-99274200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:99269400-99272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:99269400-99276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:99270400-99273000	Enhancers	Adipose Nuclei	Adipose
48	chr10:99270600-99274000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:99270800-99272400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:99270800-99272600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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