Variant report

Variant	rs10736118
Chromosome Location	chr10:99270974-99270975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99256475..99261666-chr10:99270366..99276913,12	MCF-7	breast:
2	chr10:99262328..99265994-chr10:99268306..99271864,5	MCF-7	breast:
3	chr10:99270070..99271608-chr10:99274562..99276590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10732779	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10732780	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4919103	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6584131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584132	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071742	1.00[ASN][1000 genomes]
rs7089713	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7908417	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs946984	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs946985	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs946986	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs946987	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:99260600-99271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:99260800-99276800	Weak transcription	HSMM	muscle
6	chr10:99262000-99271600	Weak transcription	HepG2	liver
7	chr10:99263400-99271600	Weak transcription	Lung	lung
8	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
10	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
11	chr10:99264000-99271200	Weak transcription	Right Atrium	heart
12	chr10:99264000-99271600	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:99264000-99271600	Weak transcription	Right Ventricle	heart
14	chr10:99264200-99271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:99266200-99271200	Weak transcription	Left Ventricle	heart
16	chr10:99266200-99271800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:99266200-99272200	Weak transcription	Psoas Muscle	Psoas
18	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:99268200-99272400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:99268400-99271600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:99268600-99271200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:99268600-99271200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:99268600-99272000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:99268600-99272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:99268600-99272000	Weak transcription	Brain Anterior Caudate	brain
29	chr10:99268600-99272800	Weak transcription	NHEK	skin
30	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
31	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:99268600-99276600	Weak transcription	HMEC	breast
34	chr10:99268600-99277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:99268600-99277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:99268600-99277800	Weak transcription	NHLF	lung
37	chr10:99268800-99272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:99268800-99274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:99268800-99274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:99268800-99274800	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:99268800-99276600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:99268800-99276600	Weak transcription	HUVEC	blood vessel
43	chr10:99268800-99277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:99268800-99277400	Weak transcription	NH-A	brain
45	chr10:99268800-99277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:99269000-99271800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:99269000-99272800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:99269000-99274600	Weak transcription	Brain Substantia Nigra	brain
49	chr10:99269000-99277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:99269000-99277600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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