Variant report

Variant	rs4919103
Chromosome Location	chr10:99270006-99270007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99262328..99265994-chr10:99268306..99271864,5	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10732779	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732780	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736118	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6584131	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6584132	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7089713	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946984	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946985	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs946986	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946987	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:99260600-99270800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:99260600-99271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:99260800-99270400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:99260800-99276800	Weak transcription	HSMM	muscle
8	chr10:99261000-99270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:99262000-99271600	Weak transcription	HepG2	liver
10	chr10:99263400-99271600	Weak transcription	Lung	lung
11	chr10:99263600-99270800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
14	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
15	chr10:99264000-99271200	Weak transcription	Right Atrium	heart
16	chr10:99264000-99271600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:99264000-99271600	Weak transcription	Right Ventricle	heart
18	chr10:99264200-99271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:99266200-99270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:99266200-99271200	Weak transcription	Left Ventricle	heart
21	chr10:99266200-99271800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:99266200-99272200	Weak transcription	Psoas Muscle	Psoas
23	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:99268200-99270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:99268200-99272400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:99268400-99271600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:99268600-99270600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:99268600-99271200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:99268600-99271200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:99268600-99272000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:99268600-99272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:99268600-99272000	Weak transcription	Brain Anterior Caudate	brain
36	chr10:99268600-99272800	Weak transcription	NHEK	skin
37	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
38	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:99268600-99276600	Weak transcription	HMEC	breast
41	chr10:99268600-99277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr10:99268600-99277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:99268600-99277800	Weak transcription	NHLF	lung
44	chr10:99268800-99272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:99268800-99274200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:99268800-99274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:99268800-99274800	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:99268800-99276600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:99268800-99276600	Weak transcription	HUVEC	blood vessel
50	chr10:99268800-99277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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