Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13757149..13759408-chr9:13764816..13767802,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1011530	0.96[ASN][1000 genomes]
rs1011531	0.91[ASN][1000 genomes]
rs10738341	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10756492	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756493	0.91[ASN][1000 genomes]
rs10756496	0.89[ASN][1000 genomes]
rs10810015	0.85[ASN][1000 genomes]
rs10810019	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10810020	0.88[ASN][1000 genomes]
rs10961216	0.85[ASN][1000 genomes]
rs11789440	0.98[ASN][1000 genomes]
rs1327510	0.90[ASN][1000 genomes]
rs1327513	0.89[ASN][1000 genomes]
rs17805200	0.84[ASN][1000 genomes]
rs4514742	0.88[ASN][1000 genomes]
rs728304	0.83[ASN][1000 genomes]
rs966989	0.89[ASN][1000 genomes]
rs966990	0.85[ASN][1000 genomes]
rs966991	0.85[ASN][1000 genomes]
rs966992	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10733267	NCRNA00085	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13750800-13758800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13751000-13758800	Weak transcription	HSMM	muscle
3	chr9:13758200-13787200	Weak transcription	Aorta	Aorta

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