Variant report
| Variant | rs10756493 |
|---|---|
| Chromosome Location | chr9:13756710-13756711 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1011530 | 0.91[ASN][1000 genomes] |
| rs1011531 | 0.83[ASN][1000 genomes] |
| rs1034167 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10733267 | 0.91[ASN][1000 genomes] |
| rs10733270 | 0.86[EUR][1000 genomes] |
| rs10756492 | 0.82[ASN][1000 genomes] |
| rs10756496 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10810020 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11789440 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1327510 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1327513 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1327514 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1562044 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1562046 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17805200 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17805206 | 0.83[EUR][1000 genomes] |
| rs2031759 | 0.86[EUR][1000 genomes] |
| rs4514742 | 0.82[ASN][1000 genomes] |
| rs4741332 | 0.85[EUR][1000 genomes] |
| rs966989 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs966990 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs966991 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs966992 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018933 | chr9:13669862-13756710 | Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv892590 | chr9:13689066-13777299 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1032702 | chr9:13723812-13760986 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13750800-13758800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr9:13751000-13758800 | Weak transcription | HSMM | muscle |
