Variant report

Variant	rs2031759
Chromosome Location	chr9:13778454-13778455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1034167	0.95[EUR][1000 genomes]
rs10733270	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10756493	0.86[EUR][1000 genomes]
rs10756496	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10756505	0.84[AFR][1000 genomes]
rs10810035	0.83[EUR][1000 genomes]
rs10961237	0.90[EUR][1000 genomes]
rs1327513	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1327514	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1562044	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1562046	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17218101	0.87[EUR][1000 genomes]
rs17805200	0.85[EUR][1000 genomes]
rs17805206	0.84[EUR][1000 genomes]
rs4741332	0.98[EUR][1000 genomes]
rs7021821	0.89[EUR][1000 genomes]
rs966989	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966990	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966991	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966992	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13758200-13787200	Weak transcription	Aorta	Aorta
2	chr9:13777000-13779600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:13777400-13778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:13778000-13779600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:13778000-13779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:13778200-13778600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:13778200-13778600	Enhancers	HSMM	muscle
8	chr9:13778200-13778600	Enhancers	HSMMtube	muscle
9	chr9:13778200-13779000	Enhancers	NH-A	brain
10	chr9:13778200-13779800	Enhancers	Fetal Heart	heart
11	chr9:13778400-13779000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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