Variant report

Variant	rs17218101
Chromosome Location	chr9:13786359-13786360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1034167	0.85[EUR][1000 genomes]
rs10733270	0.86[EUR][1000 genomes]
rs10810035	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10961237	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1327514	0.83[EUR][1000 genomes]
rs1327517	0.85[AFR][1000 genomes]
rs1562044	0.85[EUR][1000 genomes]
rs1562046	0.87[EUR][1000 genomes]
rs17805200	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17805206	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031759	0.87[EUR][1000 genomes]
rs4741332	0.87[EUR][1000 genomes]
rs7021821	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs966989	0.82[EUR][1000 genomes]
rs966990	0.82[EUR][1000 genomes]
rs966991	0.82[EUR][1000 genomes]
rs966992	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13758200-13787200	Weak transcription	Aorta	Aorta
2	chr9:13779000-13791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:13785600-13787000	Enhancers	Fetal Heart	heart
4	chr9:13785800-13787000	Enhancers	NHLF	lung
5	chr9:13785800-13787200	Enhancers	Fetal Lung	lung
6	chr9:13785800-13787200	Enhancers	Right Ventricle	heart
7	chr9:13785800-13787200	Enhancers	NHDF-Ad	bronchial
8	chr9:13786000-13787000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:13786000-13787000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:13786000-13787000	Enhancers	Right Atrium	heart
11	chr9:13786000-13787400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:13786200-13786400	Enhancers	Brain Angular Gyrus	brain
13	chr9:13786200-13786400	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:13786200-13786400	Enhancers	Fetal Muscle Trunk	muscle
15	chr9:13786200-13786400	Enhancers	Psoas Muscle	Psoas
16	chr9:13786200-13787000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:13786200-13787000	Enhancers	Adipose Nuclei	Adipose
18	chr9:13786200-13787200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:13786200-13787200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:13786200-13787200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:13786200-13787200	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:13786200-13787400	Enhancers	HSMMtube	muscle
23	chr9:13786200-13787600	Enhancers	Left Ventricle	heart
24	chr9:13786200-13787600	Enhancers	HSMM	muscle
25	chr9:13786200-13787800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:13786200-13788000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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