Variant report

Variant	rs10810035
Chromosome Location	chr9:13787648-13787649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1034167	0.81[EUR][1000 genomes]
rs10733270	0.82[EUR][1000 genomes]
rs10961237	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1562044	0.81[EUR][1000 genomes]
rs1562046	0.83[EUR][1000 genomes]
rs17218101	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17805200	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17805206	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2031759	0.83[EUR][1000 genomes]
rs4741332	0.83[EUR][1000 genomes]
rs7021821	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv892592	chr9:13787648-13859052	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13779000-13791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13786200-13787800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:13786200-13788000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:13786600-13787800	Enhancers	Fetal Brain Female	brain
5	chr9:13787000-13788000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:13787000-13788000	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr9:13787000-13788000	Flanking Active TSS	NHLF	lung
8	chr9:13787000-13788200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:13787000-13788200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:13787200-13787800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
11	chr9:13787200-13787800	Flanking Active TSS	Aorta	Aorta
12	chr9:13787200-13787800	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr9:13787200-13787800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:13787200-13787800	Enhancers	HUVEC	blood vessel
15	chr9:13787200-13788000	Active TSS	Brain Substantia Nigra	brain
16	chr9:13787200-13788000	Flanking Active TSS	Fetal Lung	lung
17	chr9:13787200-13788000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr9:13787200-13788000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr9:13787200-13788400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:13787200-13788400	Enhancers	Fetal Stomach	stomach
21	chr9:13787400-13787800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:13787400-13787800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:13787400-13787800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:13787400-13787800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:13787400-13787800	Flanking Active TSS	Fetal Kidney	kidney
26	chr9:13787400-13787800	Active TSS	Fetal Muscle Trunk	muscle
27	chr9:13787400-13787800	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr9:13787400-13787800	Active TSS	Ovary	ovary
29	chr9:13787400-13787800	Active TSS	Right Ventricle	heart
30	chr9:13787400-13787800	Enhancers	HepG2	liver
31	chr9:13787400-13787800	Flanking Active TSS	NH-A	brain
32	chr9:13787400-13788000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:13787400-13788000	Active TSS	Brain Angular Gyrus	brain
34	chr9:13787400-13788000	Active TSS	Brain Cingulate Gyrus	brain
35	chr9:13787400-13788000	Active TSS	Psoas Muscle	Psoas
36	chr9:13787400-13788000	Active TSS	Stomach Smooth Muscle	stomach
37	chr9:13787400-13788000	Flanking Active TSS	HSMMtube	muscle
38	chr9:13787400-13788000	Bivalent/Poised TSS	Osteobl	bone
39	chr9:13787400-13788200	Enhancers	Liver	Liver
40	chr9:13787600-13787800	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr9:13787600-13787800	Active TSS	Right Atrium	heart
42	chr9:13787600-13788000	Active TSS	Brain Anterior Caudate	brain
43	chr9:13787600-13788000	Active TSS	Brain Hippocampus Middle	brain
44	chr9:13787600-13788000	Flanking Active TSS	HSMM	muscle
45	chr9:13787600-13788000	Active TSS	NHDF-Ad	bronchial
46	chr9:13787600-13790400	Enhancers	Fetal Heart	heart
47	chr9:13787600-13791600	Weak transcription	Left Ventricle	heart

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