Variant report

Variant	rs4514742
Chromosome Location	chr9:13747563-13747564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1011530	0.91[ASN][1000 genomes]
rs1011531	0.97[ASN][1000 genomes]
rs10733267	0.88[ASN][1000 genomes]
rs10738341	0.93[ASN][1000 genomes]
rs10756492	0.95[ASN][1000 genomes]
rs10756493	0.82[ASN][1000 genomes]
rs10756496	0.81[ASN][1000 genomes]
rs10810015	0.97[ASN][1000 genomes]
rs10810019	0.92[ASN][1000 genomes]
rs10810020	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10961216	0.97[ASN][1000 genomes]
rs11789440	0.89[ASN][1000 genomes]
rs1327510	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327513	0.81[ASN][1000 genomes]
rs728304	0.95[ASN][1000 genomes]
rs930543	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs966989	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13744800-13750200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13744800-13750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:13745000-13749600	Weak transcription	Fetal Brain Male	brain
4	chr9:13745000-13750000	Weak transcription	Fetal Brain Female	brain
5	chr9:13745200-13750200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:13747200-13747800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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