Variant report

Variant	rs10734247
Chromosome Location	chr11:16490051-16490052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10766330	1.00[AMR][1000 genomes]
rs12225686	1.00[AMR][1000 genomes]
rs1354327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1354328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1503444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1995466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4247300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4369362	1.00[AMR][1000 genomes]
rs4411253	1.00[AMR][1000 genomes]
rs4547057	1.00[AMR][1000 genomes]
rs4643039	1.00[AMR][1000 genomes]
rs4756854	1.00[AMR][1000 genomes]
rs6486291	1.00[AMR][1000 genomes]
rs7108946	1.00[AMR][1000 genomes]
rs7110090	1.00[AMR][1000 genomes]
rs7126947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932293	1.00[AMR][1000 genomes]
rs7933676	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16464800-16491000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16478200-16490400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:16480800-16497000	Weak transcription	Left Ventricle	heart
6	chr11:16480800-16497800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:16489400-16490600	Enhancers	Fetal Lung	lung
8	chr11:16489600-16490200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:16489800-16492000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:16490000-16492400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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