Variant report

Variant	rs4369362
Chromosome Location	chr11:16542036-16542037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10734247	1.00[AMR][1000 genomes]
rs10766330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12225686	1.00[AMR][1000 genomes]
rs1354327	1.00[AMR][1000 genomes]
rs1354328	1.00[AMR][1000 genomes]
rs1503444	1.00[AMR][1000 genomes]
rs1995466	1.00[AMR][1000 genomes]
rs4247300	1.00[AMR][1000 genomes]
rs4287304	0.92[AFR][1000 genomes]
rs4411253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4547057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4643039	1.00[AMR][1000 genomes]
rs4756854	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4757406	0.94[AFR][1000 genomes]
rs61883865	0.92[AFR][1000 genomes]
rs6486291	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110090	1.00[AMR][1000 genomes]
rs7126947	1.00[AMR][1000 genomes]
rs7932293	1.00[AMR][1000 genomes]
rs7933676	1.00[AMR][1000 genomes]
rs7937573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16542000-16542600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr11:16542000-16542800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:16542000-16542800	Active TSS	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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