Variant report

Variant	rs4411253
Chromosome Location	chr11:16534395-16534396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10734247	1.00[AMR][1000 genomes]
rs10766330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12225686	1.00[AMR][1000 genomes]
rs1354327	1.00[AMR][1000 genomes]
rs1354328	1.00[AMR][1000 genomes]
rs1503444	1.00[AMR][1000 genomes]
rs1995466	1.00[AMR][1000 genomes]
rs4247300	1.00[AMR][1000 genomes]
rs4287304	0.91[AFR][1000 genomes]
rs4369362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4547057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4643039	1.00[AMR][1000 genomes]
rs4756854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4757406	0.95[AFR][1000 genomes]
rs61883865	0.91[AFR][1000 genomes]
rs6486291	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108946	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110090	1.00[AMR][1000 genomes]
rs7126947	1.00[AMR][1000 genomes]
rs7932293	1.00[AMR][1000 genomes]
rs7933676	1.00[AMR][1000 genomes]
rs7937573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761650	chr11:16530452-16541623	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16532200-16534600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr11:16532400-16534800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:16532600-16534600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16532800-16535600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16533200-16535000	Enhancers	Fetal Lung	lung
6	chr11:16533400-16534400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:16533600-16534400	Weak transcription	NHLF	lung
8	chr11:16533800-16535600	Weak transcription	Psoas Muscle	Psoas
9	chr11:16533800-16541200	Weak transcription	Fetal Heart	heart
10	chr11:16534200-16534400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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