Variant report

Variant	rs10734424
Chromosome Location	chr11:34366431-34366432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34366426..34367988-chr11:34371579..34373367,2	MCF-7	breast:
2	chr11:34365763..34368722-chr11:34368922..34370946,2	MCF-7	breast:
3	chr11:34351980..34355833-chr11:34364485..34369065,5	MCF-7	breast:
4	chr11:34356954..34359190-chr11:34365212..34367961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254708	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10734425	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1269119	0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925440	0.91[CHB][hapmap]
rs1886656	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009036	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2078164	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2078165	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2611143	0.91[CHB][hapmap]
rs2755148	0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6484707	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7944742	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34354400-34366600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34360200-34368400	Enhancers	Liver	Liver
3	chr11:34361400-34366600	Enhancers	HepG2	liver
4	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
5	chr11:34362600-34366800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:34362600-34370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:34363000-34366600	Enhancers	HSMMtube	muscle
8	chr11:34363000-34372400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:34363200-34367200	Enhancers	Fetal Heart	heart
10	chr11:34363600-34367400	Enhancers	Osteobl	bone
11	chr11:34363600-34368800	Enhancers	NHLF	lung
12	chr11:34363800-34366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:34363800-34366800	Enhancers	NH-A	brain
14	chr11:34363800-34368400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:34363800-34368600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:34363800-34369000	Enhancers	Left Ventricle	heart
17	chr11:34364000-34366800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:34364000-34366800	Weak transcription	Fetal Lung	lung
19	chr11:34364000-34366800	Enhancers	HSMM	muscle
20	chr11:34364000-34367000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:34364000-34369000	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:34364200-34366600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:34364200-34366600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:34364200-34366600	Weak transcription	Adipose Nuclei	Adipose
25	chr11:34364200-34366800	Weak transcription	Fetal Kidney	kidney
26	chr11:34364200-34367200	Weak transcription	Fetal Intestine Large	intestine
27	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:34364400-34366600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:34364400-34366600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:34364400-34366600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:34364400-34366800	Weak transcription	Fetal Intestine Small	intestine
32	chr11:34364400-34366800	Weak transcription	Ovary	ovary
33	chr11:34364400-34366800	Weak transcription	Small Intestine	intestine
34	chr11:34364400-34367000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:34364400-34367000	Enhancers	Stomach Smooth Muscle	stomach
36	chr11:34364400-34371000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:34364600-34368600	Enhancers	HMEC	breast
38	chr11:34364800-34368400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:34365000-34366600	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:34365000-34369800	Enhancers	Brain Germinal Matrix	brain
41	chr11:34365400-34367200	Enhancers	Stomach Mucosa	stomach
42	chr11:34365400-34367400	Enhancers	Gastric	stomach
43	chr11:34365400-34367800	Enhancers	Pancreas	Pancrea
44	chr11:34365400-34372200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:34365600-34367600	Flanking Active TSS	Hela-S3	cervix
46	chr11:34365800-34366800	Enhancers	NHEK	skin
47	chr11:34365800-34368400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:34365800-34368400	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:34365800-34368800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:34366000-34367400	Enhancers	Sigmoid Colon	Sigmoid Colon

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