Variant report

Variant	rs2009036
Chromosome Location	chr11:34368940-34368941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34365763..34368722-chr11:34368922..34370946,2	MCF-7	breast:
2	chr11:34368701..34370901-chr11:34379752..34381357,2	K562	blood:
3	chr11:34368537..34371450-chr11:34371767..34375088,3	K562	blood:
4	chr11:34243758..34246398-chr11:34366962..34369270,2	MCF-7	breast:
5	chr11:34351980..34355833-chr11:34364485..34369065,5	MCF-7	breast:
6	chr11:34182869..34184565-chr11:34366720..34369400,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10734424	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10734425	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1269119	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1886656	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078164	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2078165	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2755148	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6484707	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944742	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
2	chr11:34362600-34370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:34363000-34372400	Enhancers	Fetal Muscle Leg	muscle
4	chr11:34363800-34369000	Enhancers	Left Ventricle	heart
5	chr11:34364000-34369000	Enhancers	Fetal Muscle Trunk	muscle
6	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34364400-34371000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:34365000-34369800	Enhancers	Brain Germinal Matrix	brain
9	chr11:34365400-34372200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:34366000-34371800	Enhancers	Right Atrium	heart
11	chr11:34366200-34369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:34366200-34370800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:34366200-34371200	Enhancers	Fetal Stomach	stomach
14	chr11:34366400-34374000	Enhancers	Psoas Muscle	Psoas
15	chr11:34366600-34369000	Enhancers	Colon Smooth Muscle	Colon
16	chr11:34367000-34371800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:34367000-34376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:34367200-34375200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:34367400-34369000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:34367400-34369600	Weak transcription	Aorta	Aorta
21	chr11:34367400-34369600	Weak transcription	Fetal Kidney	kidney
22	chr11:34367400-34370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:34367400-34376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:34367600-34370000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:34367600-34372800	Enhancers	HepG2	liver
26	chr11:34367800-34370000	Weak transcription	Fetal Thymus	thymus
27	chr11:34367800-34370000	Weak transcription	Right Ventricle	heart
28	chr11:34367800-34376400	Weak transcription	Pancreas	Pancrea
29	chr11:34368000-34370000	Weak transcription	Colonic Mucosa	Colon
30	chr11:34368000-34370000	Weak transcription	Lung	lung
31	chr11:34368200-34370400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:34368200-34370400	Weak transcription	NHDF-Ad	bronchial
33	chr11:34368200-34370600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:34368200-34373000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:34368200-34375000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:34368200-34376600	Weak transcription	Brain Angular Gyrus	brain
37	chr11:34368400-34369400	Weak transcription	Liver	Liver
38	chr11:34368400-34369400	Weak transcription	Ovary	ovary
39	chr11:34368400-34369800	Weak transcription	Small Intestine	intestine
40	chr11:34368400-34370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:34368400-34371000	Enhancers	Fetal Heart	heart
42	chr11:34368400-34372200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:34368400-34375800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:34368400-34376200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:34368400-34377800	Weak transcription	Gastric	stomach
46	chr11:34368600-34369600	Weak transcription	Adipose Nuclei	Adipose
47	chr11:34368600-34369600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:34368600-34369600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:34368600-34370000	Weak transcription	Placenta	Placenta
50	chr11:34368600-34370400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links