Variant report

Variant	rs1886656
Chromosome Location	chr11:34356829-34356830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34355881..34357405-chr11:34377227..34379033,2	MCF-7	breast:
2	chr11:34355811..34357452-chr2:150425166..150428140,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ELF5-4	chr11:34356665-34357550	NONHSAT018749

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10734424	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10734425	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1269119	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2009036	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078164	0.80[EUR][1000 genomes]
rs2078165	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2755148	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6484707	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
9	nsv508622	chr11:34350559-34363184	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34336200-34358200	Weak transcription	Thymus	Thymus
2	chr11:34339000-34357400	Weak transcription	Fetal Thymus	thymus
3	chr11:34351800-34363800	Weak transcription	Left Ventricle	heart
4	chr11:34352600-34363800	Weak transcription	Gastric	stomach
5	chr11:34352800-34358600	Enhancers	HepG2	liver
6	chr11:34353200-34360800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:34353200-34365400	Weak transcription	Pancreas	Pancrea
8	chr11:34353400-34362800	Weak transcription	Right Atrium	heart
9	chr11:34353800-34360800	Weak transcription	HSMMtube	muscle
10	chr11:34354000-34358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:34354000-34360800	Weak transcription	HSMM	muscle
12	chr11:34354400-34360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:34354400-34362200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:34354400-34363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:34354400-34366600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:34354600-34357200	Weak transcription	Liver	Liver
17	chr11:34354600-34358600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:34354600-34358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:34354600-34362600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:34354600-34363000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:34354600-34363800	Weak transcription	NH-A	brain
22	chr11:34354800-34363000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:34355600-34358600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:34355600-34360600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:34355800-34358600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:34355800-34359400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:34355800-34360400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:34356000-34357400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:34356000-34358200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:34356000-34358400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:34356200-34361800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:34356400-34360800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:34356600-34357000	Weak transcription	A549	lung
34	chr11:34356800-34357400	Flanking Active TSS	GM12878-XiMat	blood

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