Variant report

Variant	rs10736249
Chromosome Location	chr10:118225240-118225241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10885942	1.00[AMR][1000 genomes]
rs12251315	1.00[EUR][1000 genomes]
rs1431483	1.00[AMR][1000 genomes]
rs2082379	1.00[AMR][1000 genomes]
rs2915771	1.00[AMR][1000 genomes]
rs4751974	1.00[AMR][1000 genomes]
rs7088385	1.00[EUR][1000 genomes]
rs7090468	1.00[EUR][1000 genomes]
rs7908458	1.00[EUR][1000 genomes]
rs988524	1.00[AMR][1000 genomes]
rs9943437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118202000-118225400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118222800-118226000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:118224000-118226600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118224200-118226800	Genic enhancers	NHEK	skin
5	chr10:118224400-118226000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:118224400-118226600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:118224400-118226600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:118224400-118231200	Weak transcription	Pancreas	Pancrea
9	chr10:118224800-118226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:118225200-118225400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:118225200-118225600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:118225200-118226600	Genic enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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