Variant report

Variant	rs7090468
Chromosome Location	chr10:118215649-118215650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10736249	1.00[EUR][1000 genomes]
rs10885936	0.96[ASN][1000 genomes]
rs10885938	0.99[ASN][1000 genomes]
rs1118786	0.85[AFR][1000 genomes]
rs1119265	0.99[ASN][1000 genomes]
rs11197682	0.99[ASN][1000 genomes]
rs11528290	0.98[ASN][1000 genomes]
rs12243884	0.98[ASN][1000 genomes]
rs12251315	1.00[EUR][1000 genomes]
rs1529614	0.95[ASN][1000 genomes]
rs1594483	0.98[ASN][1000 genomes]
rs2033397	0.85[ASN][1000 genomes]
rs2033398	0.91[ASN][1000 genomes]
rs2099312	0.98[ASN][1000 genomes]
rs4485017	0.98[ASN][1000 genomes]
rs4492731	0.88[AFR][1000 genomes]
rs4751966	0.98[ASN][1000 genomes]
rs4751967	0.98[ASN][1000 genomes]
rs4751969	0.99[ASN][1000 genomes]
rs6585398	0.98[ASN][1000 genomes]
rs7073523	0.94[ASN][1000 genomes]
rs7082136	0.98[ASN][1000 genomes]
rs7088385	1.00[EUR][1000 genomes]
rs7098561	0.99[ASN][1000 genomes]
rs7099741	0.98[ASN][1000 genomes]
rs7908458	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118191600-118216200	Weak transcription	Pancreas	Pancrea
2	chr10:118202000-118225400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:118202200-118224000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118212400-118216800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:118212600-118216600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:118212800-118218400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:118214200-118225200	Strong transcription	HMEC	breast
8	chr10:118214800-118217200	Strong transcription	NHEK	skin
9	chr10:118215000-118217000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links