Variant report

Variant	rs7908458
Chromosome Location	chr10:118014055-118014056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118006111..118008440-chr10:118012684..118015165,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10159509	1.00[EUR][1000 genomes]
rs10736247	0.85[AFR][1000 genomes]
rs10736249	1.00[EUR][1000 genomes]
rs11197600	1.00[EUR][1000 genomes]
rs12251315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260040	1.00[EUR][1000 genomes]
rs58605312	1.00[EUR][1000 genomes]
rs7088385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090468	1.00[EUR][1000 genomes]
rs73372464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118011200-118015200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:118011400-118014400	Weak transcription	Brain Anterior Caudate	brain
3	chr10:118012000-118014400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:118012200-118015600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:118012200-118016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:118012400-118015000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:118012400-118015800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:118012800-118015200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:118013000-118017200	Enhancers	Fetal Muscle Leg	muscle
10	chr10:118013200-118016400	Enhancers	Brain Germinal Matrix	brain
11	chr10:118013200-118017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:118013400-118014800	Enhancers	Liver	Liver
13	chr10:118013400-118016200	Enhancers	HSMM	muscle
14	chr10:118013400-118016400	Enhancers	Ovary	ovary
15	chr10:118013800-118014400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:118014000-118014200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:118014000-118014400	Flanking Active TSS	HSMMtube	muscle
18	chr10:118014000-118014600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:118014000-118014600	Enhancers	Adipose Nuclei	Adipose
20	chr10:118014000-118014800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:118014000-118015400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:118014000-118015400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:118014000-118015800	Enhancers	Fetal Kidney	kidney
24	chr10:118014000-118016000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:118014000-118016200	Enhancers	Fetal Lung	lung
26	chr10:118014000-118016400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links