Variant report

Variant	rs10736687
Chromosome Location	chr11:57565983-57565984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:57508686..57513679-chr11:57564628..57569734,7	K562	blood:
2	chr11:57555253..57557894-chr11:57565432..57567473,2	MCF-7	breast:
3	chr11:57510465..57513227-chr11:57564022..57568202,4	K562	blood:
4	chr11:57527835..57531502-chr11:57565390..57568379,5	MCF-7	breast:
5	chr11:57545030..57547537-chr11:57565376..57568397,5	MCF-7	breast:
6	chr11:57517600..57521846-chr11:57565397..57568354,3	K562	blood:
7	chr11:57561787..57564365-chr11:57565479..57568145,2	MCF-7	breast:
8	chr11:57527376..57533264-chr11:57564914..57570096,15	MCF-7	breast:
9	chr11:57546790..57549756-chr11:57565706..57567444,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198561	Chromatin interaction
ENSG00000211450	Chromatin interaction
ENSG00000254732	Chromatin interaction
ENSG00000233436	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10444364	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10750868	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10896643	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12284427	1.00[AMR][1000 genomes]
rs1313360	1.00[ASN][1000 genomes]
rs1553827	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1798174	1.00[ASN][1000 genomes]
rs1939322	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2441951	1.00[ASN][1000 genomes]
rs2441957	1.00[ASN][1000 genomes]
rs2860261	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34430954	1.00[ASN][1000 genomes]
rs474073	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs474464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs505995	1.00[ASN][1000 genomes]
rs523739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs529838	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs542777	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs552122	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs554140	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs557051	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55786036	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55838210	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56879142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57201273	1.00[ASN][1000 genomes]
rs57260887	1.00[ASN][1000 genomes]
rs57759830	1.00[ASN][1000 genomes]
rs58176671	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs585190	1.00[ASN][1000 genomes]
rs58851976	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59046396	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60076210	1.00[ASN][1000 genomes]
rs60282001	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60897155	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61444907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61638601	1.00[ASN][1000 genomes]
rs61743110	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs627861	1.00[ASN][1000 genomes]
rs635663	1.00[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs637116	0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs648412	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103407	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103768	1.00[ASN][1000 genomes]
rs7105331	1.00[ASN][1000 genomes]
rs7110490	1.00[ASN][1000 genomes]
rs7112557	1.00[ASN][1000 genomes]
rs7118249	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7118308	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7122105	0.87[AMR][1000 genomes]
rs7131175	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73472468	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73474417	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73474449	1.00[ASN][1000 genomes]
rs73474453	1.00[ASN][1000 genomes]
rs73474454	1.00[ASN][1000 genomes]
rs73474455	1.00[ASN][1000 genomes]
rs73474476	1.00[ASN][1000 genomes]
rs73482748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73482786	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73482796	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73482801	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7928666	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938752	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs947940	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57556000-57567800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:57556400-57587800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:57557200-57566200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:57557200-57566200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:57558400-57567200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:57558400-57567400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:57558600-57567200	Strong transcription	Fetal Brain Female	brain
8	chr11:57559400-57571000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:57559800-57566600	Strong transcription	Fetal Stomach	stomach
10	chr11:57559800-57566800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:57560000-57566000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:57560000-57566000	Strong transcription	Left Ventricle	heart
13	chr11:57560400-57567200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr11:57560600-57566000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:57560800-57566000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:57560800-57566000	Strong transcription	NH-A	brain
17	chr11:57561200-57566200	Strong transcription	HSMMtube	muscle
18	chr11:57561200-57566400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr11:57561400-57566000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:57561400-57566000	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:57561600-57566000	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:57561600-57566000	Genic enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:57561600-57566200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:57561600-57566400	Strong transcription	Placenta	Placenta
25	chr11:57561600-57566600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:57561600-57566600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:57561600-57566600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:57561600-57568000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:57561600-57568000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:57561800-57566200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:57561800-57566600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:57562000-57566200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:57562000-57566600	Weak transcription	Right Atrium	heart
34	chr11:57562400-57566600	Strong transcription	Brain Germinal Matrix	brain
35	chr11:57562600-57566000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:57562600-57566000	Strong transcription	Fetal Lung	lung
37	chr11:57562600-57566000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:57562600-57566400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:57562600-57566600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:57562600-57566800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:57562800-57566200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:57562800-57566200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:57562800-57566400	Strong transcription	Fetal Thymus	thymus
44	chr11:57563000-57566200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:57563600-57566600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:57563800-57566000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr11:57564400-57566000	Weak transcription	Primary T cells from cord blood	blood
48	chr11:57564400-57566000	Strong transcription	Adipose Nuclei	Adipose
49	chr11:57564400-57566000	Weak transcription	Fetal Heart	heart
50	chr11:57564400-57567800	Weak transcription	Primary T cells fromperipheralblood	blood

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