Variant report

Variant	rs7122105
Chromosome Location	chr11:57619501-57619502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10444364	1.00[AMR][1000 genomes]
rs10736687	0.87[AMR][1000 genomes]
rs10750868	0.87[AMR][1000 genomes]
rs10896643	1.00[AMR][1000 genomes]
rs12284427	0.87[AMR][1000 genomes]
rs1553827	0.87[AMR][1000 genomes]
rs1939322	0.87[AMR][1000 genomes]
rs2860261	1.00[AMR][1000 genomes]
rs474073	0.87[AMR][1000 genomes]
rs474464	0.87[AMR][1000 genomes]
rs523739	0.87[AMR][1000 genomes]
rs542777	1.00[AMR][1000 genomes]
rs552122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs554140	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs557051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55838210	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56879142	0.87[AMR][1000 genomes]
rs58176671	0.87[AMR][1000 genomes]
rs58851976	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59046396	0.87[AMR][1000 genomes]
rs60282001	0.87[AMR][1000 genomes]
rs60897155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61444907	0.87[AMR][1000 genomes]
rs635663	0.87[AMR][1000 genomes]
rs648412	0.87[AMR][1000 genomes]
rs7103407	0.87[AMR][1000 genomes]
rs7118249	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7131175	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472468	1.00[AMR][1000 genomes]
rs73482748	0.87[AMR][1000 genomes]
rs73482786	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482796	0.87[AMR][1000 genomes]
rs73482801	0.87[AMR][1000 genomes]
rs7938752	0.87[AMR][1000 genomes]
rs947940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57611600-57627600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links