Variant report

Variant	rs12284427
Chromosome Location	chr11:57658708-57658709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10444364	0.87[AMR][1000 genomes]
rs10736687	1.00[AMR][1000 genomes]
rs10750868	1.00[AMR][1000 genomes]
rs10896643	0.87[AMR][1000 genomes]
rs10896657	1.00[EUR][1000 genomes]
rs10896658	1.00[EUR][1000 genomes]
rs11229159	1.00[EUR][1000 genomes]
rs11570227	1.00[EUR][1000 genomes]
rs12292360	1.00[EUR][1000 genomes]
rs1553827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1939322	1.00[AMR][1000 genomes]
rs2000557	1.00[EUR][1000 genomes]
rs2084298	1.00[CEU][hapmap]
rs2441954	1.00[CEU][hapmap]
rs2441978	1.00[CEU][hapmap]
rs2513723	1.00[CEU][hapmap]
rs2514203	1.00[CEU][hapmap]
rs2860261	0.87[AMR][1000 genomes]
rs474073	1.00[AMR][1000 genomes]
rs474464	1.00[AMR][1000 genomes]
rs523739	1.00[AMR][1000 genomes]
rs542777	0.87[AMR][1000 genomes]
rs552122	0.87[AMR][1000 genomes]
rs554140	1.00[AMR][1000 genomes]
rs557051	0.87[AMR][1000 genomes]
rs55786036	0.87[AMR][1000 genomes]
rs55838210	1.00[AMR][1000 genomes]
rs56879142	1.00[AMR][1000 genomes]
rs58176671	1.00[AMR][1000 genomes]
rs58851976	0.87[AMR][1000 genomes]
rs59046396	1.00[AMR][1000 genomes]
rs60282001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60897155	0.87[AMR][1000 genomes]
rs61444907	1.00[AMR][1000 genomes]
rs61743110	0.87[AMR][1000 genomes]
rs635663	1.00[AMR][1000 genomes]
rs648412	1.00[AMR][1000 genomes]
rs686459	1.00[CEU][hapmap]
rs7103407	1.00[AMR][1000 genomes]
rs7118249	0.87[AMR][1000 genomes]
rs7118308	0.87[AMR][1000 genomes]
rs7122105	0.87[AMR][1000 genomes]
rs7131175	0.87[AMR][1000 genomes]
rs73472468	0.87[AMR][1000 genomes]
rs73474417	0.87[AMR][1000 genomes]
rs73482748	1.00[AMR][1000 genomes]
rs73482786	0.87[AMR][1000 genomes]
rs73482796	1.00[AMR][1000 genomes]
rs73482801	1.00[AMR][1000 genomes]
rs73484704	0.90[AFR][1000 genomes]
rs7928666	0.87[AMR][1000 genomes]
rs7938752	1.00[AMR][1000 genomes]
rs896298	1.00[CEU][hapmap]
rs896299	1.00[CEU][hapmap]
rs947940	0.87[AMR][1000 genomes]
rs975831	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57657800-57659000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:57658000-57658800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:57658000-57658800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:57658000-57658800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:57658000-57659000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:57658000-57659000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:57658000-57659000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:57658400-57658800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:57658400-57665600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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