Variant report

Variant	rs10737634
Chromosome Location	chr1:193994024-193994025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10737635	0.98[AFR][1000 genomes]
rs10801279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10921478	0.95[AFR][1000 genomes]
rs12239212	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16836057	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031144	0.89[AFR][1000 genomes]
rs608100	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs616204	0.94[EUR][1000 genomes]
rs617952	0.94[EUR][1000 genomes]
rs618961	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs619489	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs629872	0.90[EUR][1000 genomes]
rs643380	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs646090	0.94[EUR][1000 genomes]
rs650350	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs652268	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs659059	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681469	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs958096	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv548664	chr1:193938944-194000953	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10737634	RGS18	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193993200-193995000	Enhancers	Hela-S3	cervix
2	chr1:193993400-193994600	Enhancers	NH-A	brain
3	chr1:193993600-193994400	Enhancers	NHEK	skin
4	chr1:193993600-193994600	Enhancers	HUVEC	blood vessel
5	chr1:193993800-193994200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:193993800-193994200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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