Variant report
Variant | rs958096 |
---|---|
Chromosome Location | chr1:193957527-193957528 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10737634 | 0.90[EUR][1000 genomes] |
rs10801279 | 0.90[EUR][1000 genomes] |
rs12239212 | 0.94[EUR][1000 genomes] |
rs16836057 | 0.97[EUR][1000 genomes] |
rs56044926 | 0.80[ASN][1000 genomes] |
rs608100 | 0.95[EUR][1000 genomes] |
rs616204 | 0.95[EUR][1000 genomes] |
rs617952 | 0.95[EUR][1000 genomes] |
rs618961 | 0.95[EUR][1000 genomes] |
rs619489 | 0.95[EUR][1000 genomes] |
rs629872 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs643380 | 0.94[EUR][1000 genomes] |
rs646090 | 0.95[EUR][1000 genomes] |
rs650350 | 0.95[EUR][1000 genomes] |
rs652268 | 0.95[EUR][1000 genomes] |
rs659059 | 0.93[EUR][1000 genomes] |
rs681469 | 0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv3372415 | chr1:193612172-193988265 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv947144 | chr1:193921642-193969239 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv548664 | chr1:193938944-194000953 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:193956800-193957600 | ZNF genes & repeats | Primary T regulatory cells fromperipheralblood | blood |